Scaffold JGI24003J15210_10000015

Overview

Basic Information

• Taxon OID: 3300001460
• Scaffold ID: JGI24003J15210_10000015
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75415
• Total Scaffold Genes: 116
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (65.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 48.9699
  • Long. (^o): -130.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061903	Metagenome / Metatranscriptome	131	Y
F071749	Metagenome / Metatranscriptome	122	Y
F078577	Metagenome / Metatranscriptome	116	Y
F093974	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24003J15210_10000015105	F061903	AGGAG	MQIKNFRVAYSEYDVTSTLYQKKTAEELARQLEEVAPTLETAKYFVHLAQWNLKDHGHVDGLGDPLCTRLSGVKNTEDLEGLFIHMKGEWHYSDDGIYWEPTKIEFPKAA*
JGI24003J15210_1000001511	F078577	AGG	MGENSIMSDVYYKVIVTRGELSSTHYWWERTYANLMESVDILYKCAKMDAVVLEMITKKEYDNRTN*
JGI24003J15210_10000015115	F093974	GAGG	MGPIKQKFCGSCQESTEHFDDRQYAEDQEQWNCVQCFDRTGSEDALNEAIPFSDLDDEEGFIHDEW*
JGI24003J15210_1000001542	F071749	AGAAGG	MIVFTPLDIPPIPNKQSILDNFIGGEKFAWWKEETLLGVKDLSKPFGEMQEWNASAKQKYPELLNWIDTYFPFEYKFYVRIARSTGNVAPHVDGNYVKAPHPHHMTITQEMFDHQRANEPIGYRFVVSGSRDSLYMCKEYDYSQDMSNQLKHFCTIPEETDAFLINNCTQPHGVDVQEGIDDDRIVGFVLGKVIKSEHQNLIKQSANKYNTQVIKKNELRV*