Scaffold JGI24006J15134_10123204

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10123204
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 891
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_101232041	F022555	AGGAG	MAITPKFKPGQLVEYDHPANPLVGLVKSTQFARRRGDPVFVLVQWCNNRAEEEYIPQSDLKLVEGS*
JGI24006J15134_101232042	F006383	GGAGG	MHDKMWAVQQPGTLLRGRSSHQYGKLALVLEEAYAGPTPSNGYPPRKYVKMQWVATGERFEEMLNNAHNCFDIVSSCDTLGPEEN*
JGI24006J15134_101232043	F021674	GAG	MERETYNTRLNPNPEDIPLGSLLRVKKYCRENVTIRHNGEYGILAPSINGKHITHDVLFPNGTRCIYMPLNWEVVSYAR*
JGI24006J15134_101232044	F015346	N/A	EHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGELEFVDVMFGSSISKQYPVRYLVEA*