Scaffold JGI24006J15134_10117798

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10117798
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 923
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008386	Metagenome	334	Y
F013576	Metagenome	270	Y
F053565	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_101177982	F053565	GAG	MMKNYKDTCQNTLTASGKNNLKELARLTLLNILSVQGVIYTHYKNKQLKGKNENIKNR*
JGI24006J15134_101177983	F008386	GAGG	MSSEKQLILIILTAVVVFGYQWIKDEKKKHDEKLQRHLSKYFDSKW*
JGI24006J15134_101177985	F013576	N/A	NKKNKEVKIMFDDIKKEIDDTLNHLNPFENICSDGYAGNNILPSHVKKFIADKKATQKEQEMIDNWKDEIKLKQGEK*