Scaffold JGI24006J15134_10090945

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10090945
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002747	Metagenome / Metatranscriptome	533	Y
F006347	Metagenome / Metatranscriptome	375	Y
F026404	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100909453	F002747	GGAG	MAKDQRYFVDVCLEIYVPDQGCGDKALINESKDANWFANEICSQIPKAINKNFKYSERPYSVNDASFVKQQRG*
JGI24006J15134_100909454	F006347	AGGA	MVDRIEQLITTLEQEINDGYNTILDENFMESGTYINSAQCTLNELQKQITELKQGLEQGKNFSLLGENV*
JGI24006J15134_100909455	F026404	AGGAG	MVTYGKTLEIKNVTEGYTKEQIEQNIEQFTEDRNNALYDLYELKRETLAFNEGGNKYGYENLLDDTDFFTPEDFTDTYNVKGFTDEEIIEILKGMI*