Scaffold JGI24006J15134_10080008

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10080008
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1226
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054844	Metagenome	139	Y
F094548	Metagenome	106	Y
F099989	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100800082	F094548	AGGAG	MIKVGNMVQSKYVLSSGKEGNLGLVMQLRNTEEEAFGLAHVYYPKTRTFGWVVVKDMKVVA*
JGI24006J15134_100800083	F054844	AGGTGG	MRAGDLVKWRGSVGLVIGPCKKRWAAPDDVWVKWTDKTKPAIEAGRLLELLNANR*
JGI24006J15134_100800084	F099989	GGAG	MQIGDLVKVIYDGTMGLVVRVEGGPWNTPWVWLCTGESFRSDKLELVNAGR*