Scaffold JGI24006J15134_10053447

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10053447
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1635
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004549	Metagenome / Metatranscriptome	433	Y
F007401	Metagenome	352	Y
F023485	Metagenome	210	N
F044794	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100534471	F004549	N/A	IDTYKLLKKIAADDDRSAGMQITFLVKKEAKKRKIAA*
JGI24006J15134_100534473	F044794	GAG	LDVHGDEKGRIMAKKNSLRTRLLKEYTRLSKIAVRDPRNWKEVANRMRWEKIRKILWRRYDYMQSL*
JGI24006J15134_100534476	F007401	GAGG	MSDQEILKQRDLLDAILASRTTDQYERIENMKVMDSIYFKQNLPENVVLFPLQRIKRYVHTTTRKPRKKSL*
JGI24006J15134_100534477	F023485	AGGA	MYTQLPESPVRKVYKCRHCGDVSIKFYDPKQDRVYTAAEWEVIVTDGRKSLDKALRIVREDPKFFS*