Scaffold JGI24006J15134_10053255

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10053255
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1639
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001702	Metagenome	649	Y
F004376	Metagenome / Metatranscriptome	441	Y
F057681	Metagenome	136	Y
F058444	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100532551	F001702	N/A	MNKEQKQIKKVIDTAFSQLHILSNITWTPYRDEIFNMNKKDEKRHRYNRPSSDFEASINDCAKMFTVKHIAESLLNTEKWTVKDLLRIKKSCLYSQSVVENYRDRIVEAWKDQDIKYLASLNYISLIDWKHHTEILERRSA*
JGI24006J15134_100532552	F004376	GAGG	MKCLDCNFNEGTLLKEFDNESNYSWYELSEMTEVCASCGSENIKIESEEINGK*
JGI24006J15134_100532556	F057681	AGG	MLRKYNKKMFLDYASAFDYYDKMKKEMQSWSLKQFHDFYDFTHYDWESGKQLKPNREKK*
JGI24006J15134_100532558	F058444	N/A	MTLEKLLKELNSIPKKHLKTDVRVSVDALIDQGITENFWFTDVEVREVSSGL