Scaffold JGI24006J15134_10048247

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10048247
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1758
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041491	Metagenome	160	Y
F059454	Metagenome	134	Y
F069354	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100482474	F069354	N/A	MKEFNLMRLMNSCCVTIDTEYYDELYDYLTDIDVDLNELNIDDLVVNGIQFLDKKDSEDYYILKETDEGCWVI*
JGI24006J15134_100482475	F059454	N/A	MKSYLLKKLIAGYKVNPRHSGLDLVALPYKYTKEKILVRHSDKKMIIDQDTPLLGEQTFPDKFGRDKTYTLYYYQWEPSKNQIKLEL*
JGI24006J15134_100482477	F041491	N/A	TISFNVSKTINIGNFEAIKINYGQSITVDPTKDTEEQRQELIQECYSVVKKETALWTLKTIQHVDSQKNTTVYKSKAK*