Scaffold JGI24006J15134_10044902

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10044902
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1848
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → unclassified Myoviridae → Pelagibacter phage HTVC008M (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055199	Metagenome	139	N
F059332	Metagenome / Metatranscriptome	134	N
F076598	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100449022	F059332	GAGG	MTTTFSIIGIICMILAVGSIDGPTLETSGNNFVLCFVFATVGIISMILSIINQEGEDML*
JGI24006J15134_100449023	F076598	AGGAG	MSINEDTMEEVLAENLVEVIATMTEEQRDKFTKTFVSKWPRLAGEVSFNIDINLQEITSVN*
JGI24006J15134_100449025	F055199	AGGA	MTGEEKFITAILTQAVEDTMYMGKRPRYLKHKVEAIDWILNNESEHHWSFLNYCTMLGLSPSKIQNKVKGFIDPKLTSIQKTIIKDNMKKGRQDDNRIQI*