Scaffold JGI24006J15134_10042305

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10042305
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1921
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050687	Metagenome	145	Y
F076521	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100423052	F050687	GAGG	MSRFKRTKKRLEKKFPGAKLSSTPSGQVYISQNGKNIIGEEYPSLAIANSAWEAWRNLDTIEYWNRINTRNKKKLRKSLNHIVVSSDNSSYDPTDYIEKPDSFVTSDGIEWGNE*
JGI24006J15134_100423054	F076521	N/A	MAHKTNYKQNNRPERTKFNPSKFGSTWASIFWKGKPGLTAQGEANQPVIGSLNIGGKQFDLTFSECNKLIETLIDAKEAARTSKRLGTTSNGAGSPVSFMEVVSDMQQNQ*