Scaffold JGI24006J15134_10039787

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10039787
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1996
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F010947	Metagenome	297	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y
F054357	Metagenome	140	Y
F057683	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100397872	F004163	AGGAG	MKQTIEQVKRIVLDLKHYFEKSLPLILIGVALGYAFANHLETQRAEPVEIGFATVEDMSFLVQELKECKDNTLDGSY*
JGI24006J15134_100397873	F022314	AGG	VKTREILKLGDMVRLVRHEPPEDAWHDFSKESQDMMGVGLVVSMEELNGYKDVPQKKWVEYTILWSGIGEQLKHLGFDLIKITGEEI*
JGI24006J15134_100397874	F012625	AGGAG	MDPLHNKTINVGDLVKEHTKHSKGRIGLVHEIISNYYLVIKWLDGSADKRHRNKYEVTKIVKGEAYPNYLQDYIQGKRW*
JGI24006J15134_100397875	F057683	AGGAG	MSIKDNLDRETYGDLMYRLGQMDAILQDLQGTINRFHEESRRIREGQPPQIVRALDEVLRRNTQTQNQQHPMHPPSEEQEE*
JGI24006J15134_100397876	F010947	GAGG	MRKDIKKILNPALVEKWNKNKNGSLNGIVFNKGDLVSRTDCDGESLGIVLEQDGVMATVQWTKQPEDVRLQRRTFVSSLKLMSGVDK*
JGI24006J15134_100397877	F054357	N/A	MSNVAYKRGDIITHPMSGKAWLHIAEVKFSGHRGYVYECINQITGKKVTLLADGNDNIKLISETRKR*