Scaffold JGI24006J15134_10039518

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10039518
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2005
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F049295	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100395182	F049295	AGGAG	MVEEIDIEWIPEDTGAPYEVDMNQVLMDTPAHIVDKWCKKKFGHTNWARMGMVTPEELVTNPYEMDMEEGIIYFKNSRNV*
JGI24006J15134_100395184	F000720	GAGG	MTFIKENTQMRSEIPNRMMSTTFTLPIDHRDVVGIVNYKADKEGITPMALWVKLKPTDSYLDRELRASGKLVSRLLQHGESLKDIVDSLSQDNVIGQMVNYFAKNMEDIIMGKPLDKKVRMLSTDPYAMKE*
JGI24006J15134_100395187	F004988	N/A	DGNGYIKVEKKEVNCPMCEEPFSYMGKEISTNNGYVMLPEEQTRINVEGGRESKMKWSGETLPEVQK*