Scaffold JGI24006J15134_10023227

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10023227
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2816
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013716	Metagenome	269	Y
F020111	Metagenome	226	Y
F031700	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100232271	F031700	N/A	LMVNKNRTIAIRDSFIAKQFNRALGVNEPEATPEQVGRLAESLERNRQMTGAKPTKLNDLKDRYKNKPIQKKPIKPFKFPEFKIDPILPPSYFKPTAPDPELARLERRFNQMVEESNKPKGLPGILGLKKYE*
JGI24006J15134_100232272	F013716	AGGA	MNKYELKYMFEQETLKVENLIDVVGKNAHHIQDLSAELKKKDANIDKLIARLNDKREEVYKLKNXIQSQTQKNLAEYHFPSEVDN*
JGI24006J15134_100232273	F020111	GAGG	MSKIGHXNPPKDRKVNWKSVSIDPYDYEDLKKYAENLRQKKNCFRLLNGEKPLKKISIPYAISVLITQQLSVQRVLETQDNGRNFWEQQEKSLLRTYNSKGGFKRKYDK*