Basic Information | |
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Taxon OID | 3300001450 Open in IMG/M |
Scaffold ID | JGI24006J15134_10019295 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3170 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011887 | Metagenome | 286 | Y |
F012284 | Metagenome | 282 | Y |
F082923 | Metagenome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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JGI24006J15134_100192952 | F082923 | GGAG | MKHWELEHSGELIRIEWNEVATFNLQTPIGGRWVDYHCFTCCGIETDQEALEHAFEVIQAATDWTATEPYLQQPNETRTEYCARIGIAPHT* |
JGI24006J15134_100192954 | F012284 | GGAG | MKRYQIEATRFELDGTESHKVLYTSNGISTSRAFLEGFTTASDWKDYDLVNLLDTAHPSDSDLHLIDSKMHPSIDNGATSQSLADFAEVWTDVNHWGGRL* |
JGI24006J15134_100192955 | F011887 | GGAG | MELAKTDYTNETELSAAREMIERRDAELARLREEMEAVRTVSQENALMLDDIRLPLFKLLKDQLGAMVSGEIAEQLKTKETAFDIQDHMDEIREDITYNFDISSFQSEIEEIVTERDMTDEVTEIVEDVLRGAKITIG* |
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