Scaffold JGI24006J15134_10019142

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10019142
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3183
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F005537	Metagenome / Metatranscriptome	397	Y
F045772	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100191421	F045772	N/A	SSLGRCLAAFGLSGTEYASAEELVNALNNQKGSTQQVSIKDTIKKQTTETKLTALYSDWKKQNDSIEKDFESQQQSIKQNGGQNVRQW*
JGI24006J15134_100191422	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGASKNGNTKFVKVFAQVGVLFKGDDKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF*
JGI24006J15134_100191424	F005537	AGG	MSDNVKFISEIERLLKQKQDDYGKFDHTSYVMSGILEKYLSVYNNCEVKVPLKLFGIFMIFLKLWRVMQSDSYKKDSFDDINGYAELLRRLVINEQEKR*