Scaffold JGI24006J15134_10018943

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10018943
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3200
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: unclassified Hyphomonas → Hyphomonas sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000502	Metagenome / Metatranscriptome	1073	Y
F036016	Metagenome	171	N
F065109	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100189433	F036016	GAGG	MMDIETIVAMNKDQGRRSKRNSVKPMRFDDEDIEKAKEGYTTPLQKIVNLGDYVPKGWKRFNTKAIADKLNIPFSWKILDNGGLFVDSSGFGSDNEPALSVKQFLGMISKLYDFRKDLGFAICSEGQFQLTVGVYEESK*
JGI24006J15134_100189435	F000502	GGAG	MTMETIARLMMILVGFIIAMLGIITAMHSDHHMLGLMISFAGVVSMLGATP*
JGI24006J15134_100189438	F065109	GGAGG	MAKDKKWIWDRTRIILKDPEGEEITLTSEDLNDETMNCIFSDIEEYVHKEGGKLE*