Scaffold JGI24006J15134_10018659

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10018659
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3231
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006684	Metagenome	367	Y
F044196	Metagenome	155	N
F054046	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100186592	F054046	AGGA	MKIEVTKEAAWKLIGNDEKTWRDFTQTELAETTLYHGHGVNIQTVHNYIGGITQYYITDINA*
JGI24006J15134_100186598	F006684	N/A	MYKIIISYIIASAFALGLLNHAINKAQDHIETLAEVLVHHADTLEDHRSVLLQMIDDRALPYM*
JGI24006J15134_100186599	F044196	N/A	MEDITDKLENAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQL