Scaffold JGI24006J15134_10018475

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10018475
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3251
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026124	Metagenome	199	N
F031662	Metagenome / Metatranscriptome	182	Y
F038411	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100184752	F026124	N/A	MIKLDKAALKESMADTFMGTAINLPLVWIVLTICLMFTQNALIISVAQAGVLTVVAIIRRYCTRMWFKGREIND*
JGI24006J15134_100184757	F031662	AGGAG	MDFKIEKNVPVRTFNSPFCEALDQLEIGDSIGNLTKKEIYKYRPNFYTPTFRDRKFTFKKETATKYRIWRTA*
JGI24006J15134_100184758	F038411	N/A	VEIGENMTQHTEKVEQVRRRNRLNVWRKGIKFSLGQAIDNGKDVEHTTIYNDDSKTIEYLKSDRKTEIIPSPHETNELVDMMLGDENNFAEQTIRKLGEKDGF*