Scaffold JGI24006J15134_10016988

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10016988
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3415
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F013815	Metagenome / Metatranscriptome	268	Y
F050681	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100169882	F000659	AGG	MKTFSQYLEEANSKYIVSINPNDKKWYAMGHVGRNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISGA*
JGI24006J15134_100169884	F013815	GGAG	MYFVQYEKTLPPWYSGMDKIEAETSEDAVKEFYKRHNSFEERIRSVRKVQDTYQK*
JGI24006J15134_100169886	F050681	GAGG	MKKFKEYLGEAFFKVRIPDVAPTFVEADSASQVKQNMRKILKPEVVKELEIERVTPAKMKQMYRDMAKEKEVE*