Scaffold JGI24006J15134_10014515

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10014515
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3759
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029471	Metagenome / Metatranscriptome	188	N
F041249	Metagenome	160	Y
F048362	Metagenome / Metatranscriptome	148	N
F056671	Metagenome / Metatranscriptome	137	Y
F076607	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100145153	F029471	AGGAG	MMASELNQQDYSDSRLGDMEDVLDCVDMKSGIKTFFDTVISPFADHQDWTMLAEWNANSIIGVFQRHHEQCIKSLDKTRDLMKNAMREDVGNEITKLNVDKLIFRRDAQEVNIKRAEAILNEFHICYEVTFGKKFMPQSRTAAKDVTKQMKEYNVARLKEALGQK*
JGI24006J15134_100145154	F048362	AGGAG	MLIKLQNWLMNVAAKWIWIAIMLPIRIILGLIFAVAKHMPTKVELPYKVVKNEQRRENWYN*
JGI24006J15134_100145155	F056671	GGA	MRIMMTLTGLILGMLGMITAIHSDHYVLGILISFAGVMTMLTALPDNQKDR*
JGI24006J15134_100145156	F076607	AGGA	MTRYKQHIIDELAKLQFDYAECRIEMDEFISGITRLGVDSPGDIEEHRSNAEEARYDYKVSKHEDKF*
JGI24006J15134_100145159	F041249	AGG	MTEEELLNYIPRKKTRNKNTEKWGMFGLSLGKENYDRLHVYCNKHNLFKSTLVRLLVVDYLDKAEQKDDNV*