Scaffold JGI24006J15134_10013979

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10013979
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3843
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F029432	Metagenome	188	Y
F065113	Metagenome	128	Y
F065133	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100139793	F065113	N/A	MYETLEHWKQYKQEKESIDNSTKLVSEYDKESFDKWMESLIARNGTTEI*
JGI24006J15134_100139794	F029432	N/A	MAQQKYNMMKYPKIVGWSVVITMWTGCGVGLSCLQEKGNSEIVNTAESMIEWIGHDVESGKLDSTIADTYVMNLEEIINTVRCENCDEID*
JGI24006J15134_100139795	F000126	N/A	MSKRNYSITRKEGEWYNAEVTDSYGNEYQNYFETASEANEWIMYVFTKEDWFNSANSQELLANAIWGCTKLDEELGLLKGNRDSLD*
JGI24006J15134_100139798	F065133	N/A	MFSSCTKEPSWARNYGQPVNANNPTDIQSGGNISWHEGMTDDDCIKKIKGFDSYDPSKPIFLSPILYDLSQNADDKSPPSLDADYMLFPHSINSMSDVWGWDYIDELKELYRENGDEGVQMFLDKYLDGDSTLGMKLKPLTWL*