Scaffold JGI24006J15134_10012912

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10012912
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4030
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100129121	F100003	N/A	MKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVKEGMLNRNRIERNDKRI*
JGI24006J15134_100129123	F025412	N/A	MNYRELKWGALKSYATKLGINTKGMTKVALLECLAAMPEKAHEVEELTPFTGIKQEHPLFNEVEPYLPYLKAYKKLNAISREPKVNEAIATLFLKYIEQDKNVRINLGCGICKQRYYQRMIAGYNRLAEEYGGERI*
JGI24006J15134_100129124	F103288	N/A	MNIIIISILAVLAWTSLFKQTFTTKEGFKYVYEPISKILYTLDFKPLNCSYCLSFWIGLALSIAFMDLSYMVIFLYFEINR*
JGI24006J15134_100129125	F027524	N/A	VNEAFIKEKRQVIETACKNICKHSDIWKDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK*