Scaffold JGI24006J15134_10012247

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10012247
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4165
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F006282	Metagenome / Metatranscriptome	377	Y
F020817	Metagenome	222	Y
F022079	Metagenome	216	Y
F026023	Metagenome	199	Y
F041492	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100122471	F006282	N/A	MKNNETLKNRLAELSKQNTLLADHLASMCCQADEDTPGEYRTEHFRSTMDDAYEYLEKINYFKRG
JGI24006J15134_1001224712	F026023	N/A	MTKKHKIVCENCKSDKLEYVPAPFQGQSSWVDVRYEQQKDGKFKAVVHGNDSKKDWADVGLIERSIINYNDSRPWFNCNGCTAELDGFNDVHYVPIENSTQLEFNFK*
JGI24006J15134_100122472	F001086	AGAAGG	MKKQDKCTGWAIVATIERSDGTWYDETILDIDDDTASSVDEFLTDYIKEKNEESNEK*
JGI24006J15134_100122474	F022079	AGAAGG	MKQYANYVVITDDKGKKRAFYNFHELIKYLDSFKMSFLPDNFTYTIHEE*
JGI24006J15134_100122476	F041492	N/A	MKVELIEKTDLLKMIEPQYLQDFKKWSVKDLRAHFCITHKINGEYKNMSGYCFKCLTPLRPDYIQYENYCKDC*
JGI24006J15134_100122478	F020817	N/A	MKPNNMIYLILKERHYSNIENSYNIVTSSKDIDVINNKLKGYQLINDDKQNSYSIVRYESPLLLTKEVA*