Scaffold JGI24006J15134_10012037

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24006J15134_10012037

Scaffold JGI24006J15134_10012037

Overview

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10012037 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4208
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009988	Metagenome / Metatranscriptome	310	Y
F024116	Metagenome / Metatranscriptome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100120374	F009988	GAGG	MDWMNWENFAYLMVIILGALGTMVATKYRMVVKELKEVAKKYSDAKKDGKVTKEEQQAIAKECMDVMMAVVKMVWKF*
JGI24006J15134_100120379	F024116	GGTGG	MNEDFKDYLIIIAFLVFVLGGLVFFGSCDSGWSVVGYEV*

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