Scaffold JGI24006J15134_10011738

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10011738
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4273
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037985	Metagenome	167	N
F061354	Metagenome	132	Y
F084740	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1001173812	F084740	N/A	MYRLTVHVTGVPRAEVRTGRKIKNASGKWVEEVKQKIHNVISYVCKDHKEVARKLGQIRGKYTIMKGIAGQHKVSKIDKEFIQISNIN*
JGI24006J15134_100117382	F037985	AGAAG	MEKITTASKSQLRLRFIACIYPVAYVLGWPLLYGVLPSYSSYYILGGIYFTLATSMMAWALWMHRDIKWSVPAYALVGIALFNCVDYWMLHNIVAFIFFLSSTYLMKTDKRFDWLGDVSVTWYILLVIPGGVFWFEAIQAVLISWFHLSYVRRLWRVRTGKE*
JGI24006J15134_100117383	F061354	AGGAG	MNVMIWVTESNLELLNNGEVIQYWTREPANALDVVQVQISYDEFIQLRDNQPEHYVTRDHMRFINYSGMQDDNYYTSDKPGAYDEGHGIED*