Scaffold JGI24006J15134_10009701

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10009701
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4787
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F063682	Metagenome	129	N
F084212	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000970110	F084212	N/A	MTEWRNFTKIHKVNEKIYKQYASRLSEESQDVFWNLSEDQKVFVVEDWVKQGRPAQHLNEDKMADLNADQAYSAKVKGINVIINLKDTDVEATKHSKERQFRHDEKISNNAIIQAVEMAIGKIIQDYANGELGNDEPFHIRMVGKGKVPALNVIAVLDMRKGPDTIKVITVMRKDDFKTDTFGNGAQKTYTVQTR*
JGI24006J15134_100097012	F063682	GGCGG	MKAGDLVRIRKTAIDHMSTNWFIWHAEHMTPLLVIEELNKSFMKVLKPNGESIFIHRSHLTKRMW*
JGI24006J15134_100097013	F021674	N/A	VVMERETYNSRLKTNPENIPLGSLLRVKKHCRNNITIRNNGEYGILAPSINGKYITHDVLFPNGTRCIYMPINWEVVSHVY*
JGI24006J15134_100097014	F006383	GGAGG	MYISDKEWQVQQPGTILRARHSPHNGKLALVLAKSYAGRMPENGYPPYRYVNMQWCSTGERFTELLINANNCFDIVSCVE*