Scaffold JGI24006J15134_10008722

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10008722
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5086
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F006365	Metagenome / Metatranscriptome	375	Y
F014790	Metagenome / Metatranscriptome	260	Y
F019731	Metagenome / Metatranscriptome	228	Y
F036785	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000872210	F036785	GGAG	MKTDKINMVINLSILALLIYLAVAVKSLQKEVFWDKSIMKPAIGEYHGFAEGRVEMRYNIQELLNNVLREAINQTGEQ*
JGI24006J15134_1000872211	F019731	AGGAG	MADLDNILSNIDLEEQKMETEEKDWYCGSCEHGPMMDNDTNCSRCGEKHSASRHEEMTGWEDEDIEAEVEEIF*
JGI24006J15134_1000872213	F000302	AGGAGG	MIGTMTQETKDRIRQLEGQKVILEDRLEHLGYASNLVKMHEVEEQIFEIEDTIKKLVS*
JGI24006J15134_1000872214	F014790	AGGAG	MQKQIENEIEKFAKLTGLTERVTISHGTLYALLLQPERCDFFHGVIRTFYKDNINEDGGVNMYAVGDEFAFDFVEGNKDNYHSEEKGVWSEFAEEELLNNIDEEDESPAFPSYNEMPSDVDIALNLESDSKEGR*
JGI24006J15134_100087224	F006365	AGG	MSNQNIPPYDYQVWFKGSRRPILMAGMHEDHIRWQSDPKVPIKIKRIHIKEESSGPSIHLGPKGCTVNQPADYDKGFKILKAWLDTQEGPPESVRQELRELFIDYDRAKSKTTRSSTKKKLRHKI*