Scaffold JGI24006J15134_10007645

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10007645
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5465
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080511	Metagenome / Metatranscriptome	115	Y
F083280	Metagenome / Metatranscriptome	113	Y
F101842	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100076452	F101842	N/A	MFIESIIIAFSIREDMFLPVALGALAIIGLRATKKVLND*
JGI24006J15134_100076456	F080511	N/A	MKKDKVDFFFKILLKLTGVIAVSYLFMIIYSCNEDTFIGGYNKDLEEIHYQMFEVDSLIMTIQMELDSLNAKNWNK*
JGI24006J15134_100076457	F083280	AGGA	MKYLPLLFLMSCVPNTMHSHILDNKEMTHVYISDDIRSGSSHWCIKHGIIEKIEIKKPNVSSK*