Scaffold JGI24006J15134_10007035

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10007035
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5735
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018089	Metagenome	237	Y
F029428	Metagenome / Metatranscriptome	188	Y
F030892	Metagenome	184	N
F031659	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000703510	F030892	AGG	MENLVIKDSETLMERLLNPQMSDHYKTLFFGKYGTRVYEIKVGRKWVXMRSNSHRTRMPLAKFKVHAFLEWRRQAMTMASVEAFIETDRYFKPKGWWKNYGFESNPKDFVYDKSRLAW*
JGI24006J15134_1000703512	F031659	GGAG	MKKKCENPNGLQNMQTIADAKTRKSVRFNSLEKAKRYLKSKGYRYTQAFNMKEDRSMIYQGRFGWVKVSSTKDFLNKTTMEQGTVWNIVKI*
JGI24006J15134_100070355	F029428	N/A	MGRQIGNDEGSQVTFRKSIYGKSDGGKGAKPRPLSISKQEYEANWDLIFGNKNGNKKENKK*
JGI24006J15134_100070359	F018089	AGGA	MKNTTTQTPFEVKDPKASASYGQVQRIAMQFSKAKGCPKDIKFGTIRGHFLAKLNAKKFLTQGDVVKILSMKALPSADLKAMRSYKKLVSIS*