Scaffold JGI24006J15134_10005858

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10005858
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6350
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F028524	Metagenome / Metatranscriptome	191	Y
F047373	Metagenome	150	Y
F048646	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000585810	F047373	GGAGG	MITNQKIDVGDVTYSPLSHVLRFTVAANSDAIRTIEDIVGRNDMSMEEIAEEMGKILEQAIRMGYTRGGMRRRFD*
JGI24006J15134_1000585813	F005620	AGGA	MTQEEMYTKQVETFKTFCKNNRLRLKEDGDGLPVARAIGKFKDDQFFCNFKDGTIGVYVTRESPRQFTYLNKKLMKMGCMPTQLGDFEAAYDLEWMNIPPVARLLKIKKGAAKVSDPKWLRQ*
JGI24006J15134_1000585815	F014071	AGGAG	MATRPGRLIDKTFTSFTEASGRLEDTIGWVTKAKDFAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFGDK*
JGI24006J15134_1000585817	F028524	AGG	MINTTNEFESTVKEFVNKLTTIENEMTILRQDRTELFTEMKSKLDPRSFRAAVKIHNLQKSTPDQTSLSRILDVLETAE*
JGI24006J15134_100058583	F048646	GGAGG	VLKVSEVYEKQIKNTIERPDGSSYINFEKVYTDRECLISTKYIVSVRPYEFTATQDIQKLDGRFPEGAKFSTLVLDGNSFRTSEMIVVGSFESFCRRLQEKAS*