Scaffold JGI24006J15134_10005812

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10005812
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6384
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000581211	F010027	GAGG	MAITANSQYMFEILNSDELAAHPKSGLKTLVVSGSCTNADGVSFDFIATNNLDQRYPDRFKVNWNGKAARMPEVVGFGMADDVRTGRKLTEELYFTRGARIAIARKCKSLFPLWKQAAS*
JGI24006J15134_1000581222	F024571	N/A	NVDVIDNETGEIYREGVLLANAHIFITQENGKIVKEEVNTVHLDDIDGGGEIQVRDIYVDFPEERMKRDLSADAIIRAREFWQYEKGGGQVR*
JGI24006J15134_100058129	F012400	AGGAGG	MKKKYTIKKFNGDDQYSWAVFRAADVKGMRSPIFYGDANPVINGLGRSEAQYHRDRLEKIA*