Scaffold JGI24006J15134_10005234

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10005234
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6776
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y
F086307	Metagenome / Metatranscriptome	111	Y
F096226	Metagenome / Metatranscriptome	105	N
F102085	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000523412	F001235	AGGA	LPTELNTNENANDMTKKLWERHQGDEYTKVSNYKEAVCLGCMKVDVAAATVADICGDCAGKKGREPLLAKVCDKYYGLCFFCNSYKFHIEQVNGRFCNTCHTRIAKVTKEYNAKGGFMKTDPFWISMRKKHGKDWKHIMGGYRKSNRK*
JGI24006J15134_1000523415	F102085	N/A	MATSIYIFDSDKMFNAIYREHVDDLEHKMPLIDLYVKGERLWVVTNSNDMKEQPRLDRSIVHFRKDNAKEWIEGDEKLVIHGKIRYNHKRNQLEIFPRFLRKPLLSMRVGRFFGNKNGKCYIDYNKRYYDFKNDRMIFILEEKK*
JGI24006J15134_1000523416	F071758	N/A	MTMEGKCPKCKINKYGYTDGTHSIYLCYKCGRFDGISGGDNTFIEKINEEPMSLLKMIEEEILVPIS*
JGI24006J15134_1000523417	F060433	N/A	MEFTNIVETILIASILGMGGALFGFFRKMSSTQKDLCETVQRLQKTLIILAKAVDRQSNRLHPEEANSELDDLVKELLDK*
JGI24006J15134_100052343	F096226	GGA	MSLSRKDLESIICIACSRKYGEHYKGKGTKFNLPELMSCMFRIQGTLVADGINNEEPKL*
JGI24006J15134_100052344	F086307	AGGAG	MTSASAIHDLLRLLHEEWLDDGRKTVIKSMLEDMIDRMEDNINMDDMR*