Scaffold JGI24006J15134_10004217

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10004217
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7628
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F029567	Metagenome / Metatranscriptome	188	Y
F035963	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000421710	F002078	AGGAG	MEMFMNQSWFQIVGEIVLMFTALTGAMPDRLVNKIPVLGKLWPIFNWLAGNIFNNVNHPKGMAALQEVEDELDKAKAEVKDRTGLTDVLNGV*
JGI24006J15134_1000421711	F029567	N/A	MSLTGCSVLPQMAAPAANFGLGLYNADSYYSKECLWYEPVQLSAETKEWITKHKPTGVVVKDLAKVARNNDLYNEVCKK*
JGI24006J15134_100042178	F035963	AGGA	VDKLNELVIAITGGMLGVGLWIFKRLFKSIDIAHERIDKLESKQVDRQYLENQLAPIRQDLNIILEHLLGNKK*