Scaffold JGI24006J15134_10004021

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10004021
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7839
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004479	Metagenome / Metatranscriptome	436	Y
F022013	Metagenome / Metatranscriptome	216	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100040211	F022013	N/A	MENVKKVGFFKLGKAIKFNENSWGAIGGDCEPKQLINAIAKRNPNIEYWILSPNDLGRVRAKEKPAVQSLFGDPVKAKSAAEPNIHEFHSKMENRKSADETVEFIKELDLDFIFFYTGPSSTVNIPNYINKKDGNGQVKSLDFFKYYAAPIIQAMNELEKKVPIVGLLVDNRYVLACKDWGINNRPTYYLAQNNFTKEEQYFYQPPLRDVKTITSTYEYSGIETVFLLDKKRYDTDELFEMKKTDSFMMLQNQGKGTGGMDRWDPVKDYIVENDIKTDIYGKWDDELKEKYPQ
JGI24006J15134_100040213	F004479	AGGA	MHNSKILVGNSGDKVFLQGNKVIKEAGHYPEKFKQQMDFLMCCDHPNFIDVKPLSETSYEMKRYATWYDKILAQPLNTSLGQLESLISIIGKFDNVGSDVKTQDYFNKLQLRTGYTYEGKFDAISAWGFVHGDLTVSNILHDKDFLFIDPRGTEEQNYYDYGKLMQSFVMEYESHIYNNHNKTYSKFCKEAEKVMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGSFLKKGHKLFDELEIKYNK*