Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10003181 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10003181 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8885
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

8885

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F053638	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100031812	F016619	N/A	MAITIAHNADHKSLTGKTLSIQSELTSKLKTTVVDVTYGGSDNYATNGNTVDLSLGSRINTVIGASIIHCNKGLLLQYAPAANGAAATGKIKAYGHTPTSSTATVVALEELDNADTAVNSMTVRIRVIGF*
JGI24006J15134_100031814	F034394	N/A	MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNIYQLDGSQGDKIEIWKGESDSWENIVGQDQWYHGEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDSEIPLDIADAVIKMASIEIMNTSFRMDEIPSGGSVSPSESKRYWQDDIDLCISNRREVFVVP*
JGI24006J15134_100031816	F042629	GGAG	MTITTYDAVDDIISLIKTKWANLRPPHITKVWEKRTVGFIDDRSDEIIVSPKGENIEYFGLGGTAFWHEQVLELDIRTYQDIDRHNNVVKEIVKIIKDNIVGTTYTDLRVTGSYSRNFQYRNMFSYVLHLSYRKSDPV*
JGI24006J15134_100031818	F053638	N/A	MALIPIKITYKDKEEIVEFEDSLSFGQTEKLINDSVDLSDVTKPKIDLAKYRMNLLVMTIKKAPFKTGDITTLNMMNGNIVRGILREIVKIHPLTTYIEDWMETFISSEALKSSDMQSTTTVPASSDGTKKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10003181

Overview

Ecosystem & Geography

Associated Families

Sequences