Scaffold JGI24006J15134_10002978

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24006J15134_10002978

Scaffold JGI24006J15134_10002978

Overview

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10002978 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9196
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (84.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014071	Metagenome / Metatranscriptome	266	Y
F084854	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100029782	F084854	N/A	MLYTLRVVATMIVAFAAGIVINRYLYMFFDWFLDFIERWDDEER*
JGI24006J15134_100029785	F014071	AGGAGG	MATRPGRLLDKTFTSFTEASGRLEDTIGWVTAAEELAHEVQPGCKAEVTLHLLGKVLEKAARELDQASEDLAAEIFDVDKK*

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