Scaffold JGI24006J15134_10002815

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10002815
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9461
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (62.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012834	Metagenome	277	Y
F015946	Metagenome	251	Y
F027349	Metagenome	195	N
F043684	Metagenome	156	N
F044199	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000281512	F027349	GAGG	MKVWNIRVTDRNGFDSYSFFQEDQPTNQQLEAIKKIYQNSGRYFPEDIEDIEVEIKSNFDNQNIPTYDQLIDHLKDKYRTIK*
JGI24006J15134_1000281517	F043684	N/A	MTVEKVNLNWEEILSSASTGIVREVESLRQNIKWGHGAKFDRYQKWGQTVSGTMCEMALAKKMKSYFTHSVNNFHGKDLIIDNKPVQVRSQLYSKPNKSLIIRQGHKPEDYYFYVGDDCPTFYFYGYILAKDCRKYGKWTDFNQDRPHVWSVPIESLKPITEFINET*
JGI24006J15134_1000281518	F012834	N/A	MEERFTDLAWTEGDFNKATTSPSQTALSNWMWYNKYQLFPYLKFKQEKPSISFKAGTFVHDWFQNILVGQAKIDDVEFAFKTHIEQFEFEEKHKMKAQFILKKIKGYVERHLEAINEVSDNFSGWSSEKPFSDWYDDKYMGQTLNLANEGFIDCVNDNEKKITEHKNRFGSVKKYPLKKPKKDDKPNENRIGDWVYSKSQAIKYPQFTHCIQTAIYSKHFDYKYKPYLIYVGDNDYTIFTPDNCWELTPKGLQYFFKKFIQINIQRQEMLRMANGDMRKLAMIIGVDWSEIRNYKSNFLLENYHEEDMQRLEDFYEKL*
JGI24006J15134_100028154	F044199	AGG	MTYKDIIKMINDAYSSLRILNNIDWKAYRDEIYKLERQYEKNHRQYCDGRKYDFSVDIASKLFVVQHIASALKGTRHDIKSYLFLKKSIFLAESLVINYEDKIKEALKDFDLNKLCNLDYTILTEKKVA*
JGI24006J15134_100028155	F015946	AGG	MENKFKIVDWMNNRIFPDKAFTSFEHGWEYIYSKFDNEEDHQEYYVVDINQKERGQI*