Scaffold JGI24006J15134_10002677

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10002677
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9705
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042011	Metagenome	159	Y
F057750	Metagenome / Metatranscriptome	136	N
F061354	Metagenome	132	Y
F079232	Metagenome	116	N
F084740	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000267716	F084740	N/A	MYRLTVHVTDVPRAEVRTGKKIKNDRGRMVDEVKQKIHNVISYVCKDHKEVARKLGQIRGKYTIMKGIAGQHKVSKIDKEFIQVSNIK*
JGI24006J15134_100026772	F057750	AGAAG	MTKENYLFESTREKAVREAQAVVDFMVGGKVKVYTKYCDESRTWYMVGEYQSYINYAGKPKGIAMYKSEKMDRYYDVSVFAAFFKQRAAYMNASYYWQIQARENNIHPAMFKAWFDSKKRTTSDMVSA*
JGI24006J15134_1000267720	F079232	GAG	MLKVKRSKKTKTIVYGIEITKPWSKEMYAHNERTEDHLKDQIKKSFEKTYWCEPIMEEKLRDMANEIAGYKYGEGFSLQDIVEEVLKELDHMPGFQLHETMYYLHHKGYVKTQAMGLIGYQPDPYLVPYWEVK*
JGI24006J15134_100026774	F042011	GAG	MKKKQQYETSAMIAMIALIVMVVSLTINIAIGKSTIEEEAIPPMRTEYRYEWYPSPLEQRKMDSLYSIDAATKSDMDSIRSMIDNILDKLE*
JGI24006J15134_100026779	F061354	AGGAG	MKVMIWITQSNLELLNNKEIIQYWVREPGDALDVVQVQISYDDFIQLRDNQPEHYITKDHMRFINYSGMQDDNYTSDRPNANGEGYGIED*