Scaffold JGI24006J15134_10002339

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24006J15134_10002339

Scaffold JGI24006J15134_10002339

Overview

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10002339 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10490
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056082	Metagenome	138	Y
F061293	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000233912	F056082	AGGAG	MGKVNEYSLQLLEDWGDSVDIYYTQFLEVAFFLKVSTTQQMAVAFIKRKLPALAESEISFLINXIIDGYHETL*
JGI24006J15134_100023392	F061293	AGGAGG	MTEVIIDKGIPLPSDIRNELKYPFDKMSIGDSIFFTLGEGDNAQRMKNRLSQATRTYGKKQEPEQHFVIRYRLENEISGVRVWRKD*

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