Scaffold JGI24006J15134_10001720

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10001720
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12360
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012239	Metagenome	282	Y
F046700	Metagenome / Metatranscriptome	151	Y
F052947	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000172010	F052947	N/A	MRAQFLKALVKKFPNYMELGGAVKRYYDLRQSKLSKEECEKIVLGSSFSIN*
JGI24006J15134_1000172013	F046700	N/A	MKWLNSDTQAFEVIFKVEDMNGHEKNVNKAIWNPFRETFTTLKELEKSADLIDWNCGICKIPIKSRMDSKKVENFVCSKCSKAHNSRNRSVDGRIIDTSIKFTKHCKHLLKKEQREFMSYAKRSSKA*
JGI24006J15134_100017206	F012239	GAG	MLIDNQFELEIPTHIAFTLYKNDYIDNLIISKVKKECKNKSQNKNEFIVSLDDFNNAIQTSAFLRAELKKTLDQDLLPNPNFKPNSIFFLQSIINRLSNLSKITFKISDEKIYSRMIKVDGGREIVSFHFNIIEGIFDLTKILNREQLDTFNKRFMDVGVMKNKYLERTPYFYIKATVLFDILSQMDEHQVMDAFDIITAVDPKIEEDDPILLVKTDYTPY*