Scaffold JGI24006J15134_10001439

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10001439
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13526
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (68.57%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007771	Metagenome / Metatranscriptome	345	Y
F018198	Metagenome	236	Y
F028833	Metagenome / Metatranscriptome	190	Y
F032811	Metagenome	179	Y
F034338	Metagenome / Metatranscriptome	175	Y
F051205	Metagenome / Metatranscriptome	144	Y
F067095	Metagenome / Metatranscriptome	126	Y
F081446	Metagenome	114	Y
F092216	Metagenome	107	Y
F101337	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000143912	F007771	N/A	MKTIIHAKCIDEKVRLALYGMLEYSATKLFPRRMRYVSIKLHLKHYEYEGEAMIEEDTKTINPRKFKIVIDPYRLREDDWGRELNYSEWVSRILRTLAHEMVHIKQYVMSELTFKREKMCWKNEVIGDMTEDQYYCSPHEVEAYGKEKWLQLGYTAAWNKIEGEAEQVASPTDCKSAV*
JGI24006J15134_1000143913	F032811	GAG	MRVAPGCYFEQEEEEPIDPIRGRKTSANIKEPTYRRRSTLEDIPDNYSERIMRMKGAARSVPEREVRTPEGFAVTIAYNKSGYQVIPKEDLKN*
JGI24006J15134_1000143918	F028833	GGGGG	METERRLRGKITYMWSDGVIDNIARKVAEEPMEDVPQHVIDEERGDMLRQMRKEQAQMEMYDDPYLNWSGHR*
JGI24006J15134_1000143921	F092216	N/A	MKKKYDRFDLEEEIMKVWQTEDDLDAVVHRMMEDPDPIPNKEIANLLISVSKIHDLRCQKLFDIFEKMVIDNCFVYKGTSLDYRGVPLDEDNRQATLWEDEVTIEEF*
JGI24006J15134_1000143923	F081446	AGG	MSWCVEYWKVERKTSGSHAQMREQLTWVKPDPKDISRRYFTDYKSAKRFTKSIFDYGFHANLKKE*
JGI24006J15134_1000143927	F067095	GAGG	MRLLNIPIKTTYYTLKGKALVFLGDKFCEYSLDLETNGWMKSSLLLWSIGVWFYDASSKYAWIHITGHIPVKKYNE*
JGI24006J15134_1000143928	F018198	N/A	MSEREVQIFIDKKEILYSHSNIVQAIYAFLPYLTNDDITELSDKCTTMLDHRRQKEKQSRLEAKNIPIQSNRHDT*
JGI24006J15134_1000143933	F034338	AGG	MSNYDVDEREREERTERFEHAINCMDISPLAMMSFEKIALENEVSLVELLQTMLLNALDRELTKGHEMDYTEGLYG*
JGI24006J15134_100014395	F101337	AGG	MLEILIFGLVVFAVICLWVLIEQRKSPKFLIWFIPLFLVLVTSTYLTYTSILGFPKEGIPSKGLYLKHHIDEPDWVYIWVLGKNNIPMGYKLVYTRAIHNSLIGVEGKANKGKFMVLGEDEEMVEEFDGEPGEKGYGGFTVGGDISFYEWDYSSAMPPKNITN*
JGI24006J15134_100014396	F051205	GAG	MLLLIFVMIATWIVVGCGTSTTGCYGHWVKGPGHHRGTRALLKDAHLPYYQCVDENNKGTNLEERSYL*