Scaffold JGI24006J15134_10001007

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10001007
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16236
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (50.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F040325	Metagenome / Metatranscriptome	162	Y
F047713	Metagenome	149	N
F056888	Metagenome / Metatranscriptome	137	N
F074009	Metagenome	120	N
F081895	Metagenome / Metatranscriptome	114	Y
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100010071	F040325	N/A	MARRKIGNSHTTICVSWEDKELFRKFASFVKKTRTGNLYESDAVLFSKMLNHFKENNAIGEISNTTYPSKV*
JGI24006J15134_1000100714	F047713	AGGAG	MEIIGQGEVATLEIMKEMFGNSSEYMTQVKLSNMVTPEYLETFSDRQLKETIDIVVVTVFENLAIRVQDKHHASARMATIDNIQKNMLEWNGWKVIDIWHYECKELWKDKVNTKSRLELELAIKESSVD*
JGI24006J15134_100010072	F007003	N/A	MIHYFSNIHYFTKNIDQKKYNDIIQRIIMINGHNGVSNSGYRAWQNFEENWTLNIIPVTDQEDFKVYYKHLNVETSDGIAWGVTGSKVIYMFVNDVKNPFIIRQNVMPLGHELLHAIYQDAVGTFHITRKYDSPEGKAGTKSAAATVIVHDNWYGNKKTIKIWIRWGMIWLPITIPFIPIKEAKKQYEI*
JGI24006J15134_1000100721	F081895	N/A	LYDKVKTIKRIKKLESNLFITFCHETDKELEIRHEKGILMHYLRALEKLKVEQSNDIK*
JGI24006J15134_100010073	F074009	N/A	MGTKIKGKYAGQCKICGSDWKVGEDIFYQKDPKAICSDKECFEEQGGKFTPYSGQGTLTNTAGWGKTPIITKLPEVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE*
JGI24006J15134_100010074	F056888	N/A	MNVSEVLDIKGSHENSQKLVAGDKITIQSFKIKNVDEVGAEVVEIETTEGLRHSFGKTVIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEKEAEKTGRMMLCLSMFPPKN*
JGI24006J15134_100010078	F092887	AGGAGG	MVISRTVRPKKKILTSIVSVEKSRRVSTRNRIINTLGIYKRGLPLTEIQYKGDISSMGNLHHTIKFMVRAGEVDKIKCPHCNSTELYKLHI*