Scaffold JGI24006J15134_10000606

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000606
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21937
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (74.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F042374	Metagenome	158	Y
F059457	Metagenome	134	Y
F086174	Metagenome / Metatranscriptome	111	N
F089161	Metagenome	109	N
F091013	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000060622	F089161	AGGAG	MSYKYNLGEELNQIEADQDNEKQSAITKHLNDICVMDKLVFALDQYILKFGRVSNVHDQCFDLKVQVLENKKHLQEWIDKI*
JGI24006J15134_1000060624	F005751	N/A	MSDIYLADFEPNKLSYQQEELGITFADLDTAVELMKKEEKMIVAELTIYYSRKGNYKNMTELNGLIYSDTKFKDYFDRYGITLKKRNQSKIRFESFKAFRDDLRTKVVNEREMAKRNL*
JGI24006J15134_1000060626	F091013	GAG	MIKNEVKLSEFVIHCKETKYYNVNIKARNYEEAEKRWKNIAKRRDYQTLLNELEVISISEE*
JGI24006J15134_1000060629	F042374	GGAG	MYKTISIIFVLVSIGGCSTMPIVDSRGKSSANIKGDMNRFHDDYFTCKSLVEDQTSSGWNIGKTIYNNLRWKVLWLSPKLNTRSDFVNRCLEGRGYSVLNK*
JGI24006J15134_1000060631	F059457	GGAG	MNNLPKIGNTELYTARVLNMSVAQYYGLVKEYSEMLNQAREINKEQLDKDKEKAELNLIYGIRYNLNKLVLEKLKGEN*
JGI24006J15134_1000060646	F086174	GGAG	MAITYTWSIVDMERQITMGDKSDVITEIRYQLDGTETVDGTAHTGSMSETVSVELGSQTFKAFSSVAEADAIQFVKDKLGADGIANSELNVSNQISEAQTPITATGVSW*