Scaffold JGI24006J15134_10000529

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000529
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23705
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (89.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F025414	Metagenome	202	Y
F037480	Metagenome	168	Y
F077952	Metagenome	117	Y
F094548	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000052910	F037480	AGGAG	MKVGDLVIMPGSCYRDNSNNPATGIILRTKPDGIPRGTPSLSRVKVYWLQDAEVSWEPKKWLEVINESR*
JGI24006J15134_1000052925	F094548	AGGAG	MIKVGSMVQSKYSMGRRAKPGNLGLVLELRNTEEEAFGLARVFYPKTGKQGWVVVKDMKVVA*
JGI24006J15134_1000052926	F025414	AGGTGG	MKVGSLVRETMDGNIGVILAWENDGWLVNFPKHGMVFHMMPRLLEVVDASR*
JGI24006J15134_1000052933	F005547	GAG	MMKVWVLCGSYESEGFTSVHLTEKGCALACIADVLQFLGVDDEETALQVVNSHYSYTETDGEQTEPFEWDSDKLKDMSREELWKVFNDWTENSWEHMADRSYYITADAQMIQP*
JGI24006J15134_1000052945	F077952	AGGAG	MKFYVSRTHVFINDSGKVDGYETVLTKPDSHKPTREMLRRMKALGIPNLHICEHPTNSRRWGQLDRAQTKRTKTRAMTMADVAGDLAELEKEAAEKEANNS*