Scaffold JGI24006J15134

Basic Information
Taxon OID	3300001450 Open in IMG/M
Scaffold ID	JGI24006J15134_10000294 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300001450 Open in IMG/M

Scaffold ID

JGI24006J15134_10000294 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33010
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (53.66%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33010

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (53.66%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F004880	Metagenome / Metatranscriptome	420	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F074009	Metagenome	120	N
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000029417	F004880	GGAG	MSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIRFQYHYCDLCWNYIHLKKGTCDSCGSSMTNRSENKNTSVLCSCGNEVELKW*
JGI24006J15134_100002942	F034394	N/A	MVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEEFDRRVGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNIYQLDSSQGDKIEIWKGESDSWENIVGQDQWYHGEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDSEIPLDVADAVIKMASIEIMNTSFRMDELPSGGSVSPSESKKYWQEDIETCINNRREVFVIP*
JGI24006J15134_1000029424	F001066	N/A	MDKNDDIFKIKPIGNTDIVVEDKRKTISPFNSAKHFKEANIPALCDQCVYKSVEEGGNGKCPKYEKGAVCGIRKDFISFINELDTRNPEDLKNMIDMVAKLTFENVLMTLTQAKFDGNVPDRNSKSEINTLLNIVKSMNDLNSKITITEKKEFSKEGDIESIFRQIKAQKKDG*
JGI24006J15134_1000029432	F074009	N/A	MGTKITGKYAGNCKICGSDWRVGEQIFYQKDPKAICVDKECFEEQGGKFTPYKQQGTLTNSTGGWGKTPIITKLPDVEVSDEVKKITEYWDQFFLVAHHKTKAIYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE*
JGI24006J15134_1000029438	F092887	GAGG	VVISKPVRRNKKTSKSVVIIEPSRKVSTHDRVINVLKEYKRGLPLTELHYKTQVASMGNLHHTIKFMVRAGELEQESCPHCNSTELYKLI*
JGI24006J15134_100002944	F042629	N/A	MTITTYDAVDDIISLIKSKWSNLRPPTISKVWDKRTVGFIDDRSDQVILSPKGEDIQYFGLGGSAFWHNQIIEMEIRTYQDIDRHNSVVKEIVKIIKDNITGTTYTDLRVIASFSKNYAYRNMYSYVVTISYRKADPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24006J15134_10000294

Overview

Ecosystem & Geography

Associated Families

Sequences