Scaffold JGI24006J15134_10000289

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000289
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33536
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (54.90%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F056918	Metagenome	137	Y
F070556	Metagenome / Metatranscriptome	123	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y
F092746	Metagenome	107	Y
F092748	Metagenome	107	Y
F094425	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000028912	F056918	GAG	MKQLKVGDVVIAVFLGSPEPCEVIAITNKKEKLYKLRMNSGTILPGVTWLKNLDAKQKKTKPWHILKYVKHVKPKVQKDDKIKRSDLDQAIDEQRKFIRGEIKE*
JGI24006J15134_1000028919	F077815	AGGA	LKNRLKQIIREEVHSCLKEASYKFGTLADPKDMDPNDPMVKVTGFASLNRSSVRNQIVDRLSGALATAKDAAKGGESSYQAYKQLQDLISDAGILYKLIGAELDVANALEATRLKGGRRTIPIPKQ*
JGI24006J15134_1000028920	F074050	N/A	MKRSYITKLVKEEIHSLKNEASSKAIKRGTVTDNARLAMILTSLGKRAKGSFQKRKVVSQVIMQLATALEITPNEVLRAYIDYKRDAKGDASTKVKKDD*
JGI24006J15134_1000028928	F053550	AGTAGG	LKSIMILYFQLKDLGHFNMREEIKKARLKKKVMDNYPNATVEYTNTGVQIMSGDIYIAEEFYLPVTMDVETAWEYAAIACKTRQQFNRTHPMRMDLSDIESKINRINKRRGPRNKRK*
JGI24006J15134_1000028930	F092748	N/A	MKVTKPYSSLNQVAAINEKKVEHLGKNYATIDFEIKDQVNPTDFKYAKMKPVVGTFVIGNKRVEVTYSELNHILRTAAAAAEQCDMAYRIGKWGRAQKR*
JGI24006J15134_1000028931	F070556	N/A	MGFHKRYINDDQVIELYRTQGNQAVIDLYTKGVDAVITQGDLSEHVLDMLEIGLLTEVDKWNKISELISDASIEKGFE*
JGI24006J15134_1000028936	F092746	AGGAG	MSDIKNPQQVKRQLDEADNMLSILQNVIHRGLKIEPQEAQERFSKIRSKIKYAMDSISG*
JGI24006J15134_100002898	F094425	N/A	MKKKSEIKYGIEITKPHSKDMYSHNDMVAKEMKFNIRDAWANEVIKFNANDEWPTEGKIVDIQKGVCAVGYGEGYTIEEVQNDFLQELDNMANWQLHEEYSYMSFKNSLVPRTRFMMVGFDWEKHDYSFCTDIDISPIARMEEQVNNI*