Scaffold JGI24006J15134_10000148

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000148
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55798
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (70.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003898	Metagenome / Metatranscriptome	463	Y
F007345	Metagenome / Metatranscriptome	353	Y
F025855	Metagenome	200	Y
F030896	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000014851	F030896	GGAG	MKTNVLNPNSGSYGDFNSPLYDKDSAFASGRWQDLVRKGHITSLAVSDAVVDAGISILPNHEYVSSWTSDATSAIALPAAVEGTFIAWMNVADADAGNAMTISAVSGDVFEPYQEVHIGTGIPAQQDSSVATDDILTITPAGTNGGWGQIGSSYMLYCKNAGKWLVKVNGVLKGTGAAGTIAFSS*
JGI24006J15134_1000014852	F025855	AGGA	MKKQCIHCKEPNKEGWFYCRECGKKASKTNFTTNMWMRSDMGKRSDVEVSVQSVDENTKEMNKRIYA*
JGI24006J15134_1000014866	F003898	GGA	MDSLKVSGISTSLGLVYYTDIISGILMSTMFAINIYYILLKIKKIRE*
JGI24006J15134_1000014867	F007345	GGAG	MELLSNNWEWVLLAFMVLEKIVKISPTDKDDILVDMVFKGLSKMLKKGESE*