Scaffold JGI24006J15134_10000102

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000102
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77677
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (85.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018267	Metagenome	236	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F053548	Metagenome	141	Y
F086310	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_1000010211	F019158	GAG	MKMTIVIDSSDREGIHDALKMVRIMHTKYSGNATAHKESFSKIEFIKMLRKFMKESIEHLDDPDSGQVRDMTDMPNLRNAKRFADRIFTGMR*
JGI24006J15134_1000010215	F086310	GGAGG	VQVGDLVKHFLTEQVGIVLTVVVAKPRRSIGSVHVIWTTQGDSLFGPGNKEWCCPESLEHLTTA*
JGI24006J15134_1000010216	F025414	AGGA	MQVGSLVRETIDGNIGVILAWENDGWLVNFPKHGMVFHMMPRLLEVISASR*
JGI24006J15134_1000010223	F053548	GAG	MKDSGAPSIGDLVIALYDELRDISCVGLVMETKGIECKIQWSSESNPIGWWPRSKLKVISAV*
JGI24006J15134_1000010227	F018267	AGG	VKVGDLISFKPKSFGDDDWSNPGIVLDSYEDDDRQAGGWKDLIWIVWIDGGKYMINERNDDVTYLTSS*