NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10000091

Scaffold JGI24006J15134_10000091


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10000091 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85402
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)84 (54.90%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015345Metagenome / Metatranscriptome255Y
F023365Metagenome210Y
F072857Metagenome121N
F075437Metagenome119Y
F086311Metagenome / Metatranscriptome111N
F104049Metagenome101N

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_10000091123F075437GGAGMTDGFEGDIMSRDTKSTFHETKEVVSRLREPLKIKAIPYATTKVRGHQIQLEMNISWDQIDQMTGKDSVIIDMIENMKKLIEGPMESTYLGVLVNES*
JGI24006J15134_10000091149F072857N/AMAGNYYGINAVKDLLNIEITDTVDDELINRFGAVANQHLDNILKQHDERIPLKVPSILADVKMSANYYVCSLFRGKRGDNETAKFWKDMFTDTINGIIEERSIEGLSYDVQRFNDRYRQEDVYRLW*
JGI24006J15134_1000009129F086311GGAGMANGTQITIQSEDVGTIIKGTAKSRSGSTDTVIDLNDVTAVVIYLRDPDGNLTDHTATATNADGGTDGIWSFTTSSAIFSLLPGVWHIQAKYSLAGGTVFYSNIKTLNVGETLL*
JGI24006J15134_1000009130F015345N/AVTTIDLFAIKQRIVEILQSDTNLYDSTPSDKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANINHVAVIENNIHKGDEYDIRIKIIFVVEAKDGPTTEEKIDDFTKLIIEKLEANYDLRNTSGTESTRVAESSRVTQIMDLPALFKGDRVKGRSIKFQVIVRA*
JGI24006J15134_1000009133F023365N/AMGVGEIAEIVNASELTLETSTGNYILLTNLSLHIGRPEDRIATTDGGALFSYGKGDNYFTATLLVSTPELSDLNTLGQIDSDGDMTPRSWLIKAKDVSGTTKTFAATGILREYDINKPSEGKVSIDIFVRITGDDISIS*
JGI24006J15134_100000915F104049AGCAGMPQDKGPKELNLYTEDQVWELVTKAITRTLYDCIASHEAHGQVMIEVDWLRDYADMIAITFPRIEPP*

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