Scaffold JGI24006J15134_10000091

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000091
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 85402
• Total Scaffold Genes: 153
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 84 (54.90%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F023365	Metagenome	210	Y
F072857	Metagenome	121	N
F075437	Metagenome	119	Y
F086311	Metagenome / Metatranscriptome	111	N
F104049	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_10000091123	F075437	GGAG	MTDGFEGDIMSRDTKSTFHETKEVVSRLREPLKIKAIPYATTKVRGHQIQLEMNISWDQIDQMTGKDSVIIDMIENMKKLIEGPMESTYLGVLVNES*
JGI24006J15134_10000091149	F072857	N/A	MAGNYYGINAVKDLLNIEITDTVDDELINRFGAVANQHLDNILKQHDERIPLKVPSILADVKMSANYYVCSLFRGKRGDNETAKFWKDMFTDTINGIIEERSIEGLSYDVQRFNDRYRQEDVYRLW*
JGI24006J15134_1000009129	F086311	GGAG	MANGTQITIQSEDVGTIIKGTAKSRSGSTDTVIDLNDVTAVVIYLRDPDGNLTDHTATATNADGGTDGIWSFTTSSAIFSLLPGVWHIQAKYSLAGGTVFYSNIKTLNVGETLL*
JGI24006J15134_1000009130	F015345	N/A	VTTIDLFAIKQRIVEILQSDTNLYDSTPSDKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDVVANINHVAVIENNIHKGDEYDIRIKIIFVVEAKDGPTTEEKIDDFTKLIIEKLEANYDLRNTSGTESTRVAESSRVTQIMDLPALFKGDRVKGRSIKFQVIVRA*
JGI24006J15134_1000009133	F023365	N/A	MGVGEIAEIVNASELTLETSTGNYILLTNLSLHIGRPEDRIATTDGGALFSYGKGDNYFTATLLVSTPELSDLNTLGQIDSDGDMTPRSWLIKAKDVSGTTKTFAATGILREYDINKPSEGKVSIDIFVRITGDDISIS*
JGI24006J15134_100000915	F104049	AGCAG	MPQDKGPKELNLYTEDQVWELVTKAITRTLYDCIASHEAHGQVMIEVDWLRDYADMIAITFPRIEPP*