Scaffold JGI24006J15134_10000066

Overview

Basic Information

• Taxon OID: 3300001450
• Scaffold ID: JGI24006J15134_10000066
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105274
• Total Scaffold Genes: 123
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 90 (73.17%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F009562	Metagenome / Metatranscriptome	316	Y
F010950	Metagenome	297	Y
F014672	Metagenome	261	Y
F019158	Metagenome	231	Y
F037424	Metagenome	168	Y
F057769	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24006J15134_100000661	F019158	N/A	DSSDREGIHDALKMVRIMHTKYSGNATAHKESFSKIEFIKMLRKFMKESIEHLDDPDSGQVRDMTDMPNLRNAKRFADRIFTGMR*
JGI24006J15134_1000006612	F014672	N/A	VGVFANEREQALLVEKFKTGDLVKIREGTHATEIPEHRTGMIIERGEASGNYTESYTVIFLGTDIHLKFHAMFLEHFTST*
JGI24006J15134_1000006613	F009562	AGGAG	MLTLPLIRTDDDSTLTPIERTAVACEQVITALLMAASMGDPRLNDQEREVLTTLSVATIVPAEA*
JGI24006J15134_1000006616	F010950	AGG	MMKIWVVRQTCAHSNDTYLSTHITEKGALITAIEAVRADMADGLDGDELEDMRPGMPHDFDEDLMKYSSDHLRGIVQDWWEYAWEIDEYQQYQIHQTQVTA*
JGI24006J15134_1000006617	F057769	AGGAG	MIEVGSMVTNVGFIQGRNNSNHGVVISLMAGGKIARVFWASTQKSGFCSVVDLQVIA*
JGI24006J15134_100000662	F004771	GGA	MKVGDLVRMKTHNTGLVGIVMGRYPKYTDTGPIQIGIKWFKGSGKTDWEPESWLEVVSESR*
JGI24006J15134_100000665	F037424	AGGA	MSYNGTVRCSYCYTTGHNKRKCSDYTAMVLRRYNDNLGFAAQVDEARPDHYLQQAERYRLVYMKRTKIDPATGEKVKNKTAKAERMKKVTCGYCSQRGHTRRVCGVVERDKLVFIEESRRVRAGVLEDARETGIGVGSMIPIRTRGYNADNEWGTHTTLRYVKSVDWNTVTANRAGLWVYHVDARKLGAANQGRWTSRDKIVSLRENFNEACSHAELQNHSEPTASLIPSLDPAAGWLDCEPSTIDVAAHFPTKGNKYEKQRGHNYTWPRGVTAEVIRDLGLEEHYEVS*